PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_06013.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 229aa    MW: 24900.9 Da    PI: 5.1317
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_06013.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.68.5e-1565114155
                      AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                              s ++G+r +  +g+Wv+eIr+p++   ++r++lg++  +e+Aa+a++ a+++l+g
  Rsa1.0_06013.1_g00001.1  65 SFFRGIRLR--NGKWVSEIREPRK---TTRIWLGTYPVPEMAAAAYDVAALALKG 114
                              5699**975..6*********843...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.94E-1765122IPR016177DNA-binding domain
PROSITE profilePS5103219.30966122IPR001471AP2/ERF domain
SMARTSM003802.2E-2566128IPR001471AP2/ERF domain
PfamPF008472.5E-867114IPR001471AP2/ERF domain
PRINTSPR003671.1E-56778IPR001471AP2/ERF domain
CDDcd000181.94E-1567122No hitNo description
Gene3DG3DSA:3.30.730.109.2E-2567122IPR001471AP2/ERF domain
PRINTSPR003671.1E-5104124IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MSSSTDSPTT GNKQTTTFRL DSIALPSKSS DHQSPQSSPG SSSSPSPTPR PSTKRTTTGL  60
SGRHSFFRGI RLRNGKWVSE IREPRKTTRI WLGTYPVPEM AAAAYDVAAL ALKGPDAVLN  120
FPGLALTYVA PATNSAAEIR AAAARAAEMK QPDPVEKVMD PGQHGKEEEE KAMQLSSLEF  180
MDEEDMLDMP NLLTEMAEGM LMSPPRMTNP TMDDDSPENH VGDSLWSYK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00558DAPTransfer from AT5G52020Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013609473.11e-112PREDICTED: ethylene-responsive transcription factor ERF025-like
SwissprotQ9FJ902e-98ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBLA0A078H3D61e-112A0A078H3D6_BRANA; BnaC09g28200D protein
TrEMBLA0A0D3EA861e-112A0A0D3EA86_BRAOL; Uncharacterized protein
STRINGBra028291.1-P1e-109(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM134571424
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.15e-82ERF family protein